Device and method for micro-pet or micro-spect of a cell culture

ABSTRACT

A biocompatible column for concurrent micro-positron emission tomography (micro-PET) or micro-single photon emission computed tomography (micro-SPECT) of at least two cell cultures is provided, the column having an inlet, an axially oriented perfusion chamber and an outlet, wherein the perfusion chamber includes a porous solid phase with sponges having biopolymer (such as silk, silk fibroin, collagen, gelatin, agarose, alginate, polylactic acid, agar, or methyl-cellulose), an aqueous liquid phase, a first cell culture and a second cell culture, wherein the first cell culture and the second cell culture are in contact with the solid phase and wherein the first cell culture is separated from the second cell culture by the solid phase. Also provided is a method and a kit for concurrent micro-PET or micro-SPECT of at least two cell cultures.

The present invention relates to devices and methods for micro-positronemission tomography (micro-PET) or micro-single photon emission computedtomography (micro-SPECT) of a cell culture.

Current strategies for preclinical screening of potential diagnosticcompounds for positron emission tomography (PET) or single emissioncomputed tomography (SPECT) are mainly based on prior biologicalknowledge, ex vivo autoradiography, and in vivo PET or SPECT of smallanimals.

However, prediction of in vivo absorption, distribution, metabolism andexcretion of compounds based on prior biological knowledge correlated toex vivo autoradiography is still very limited. Promising lead compoundsoften have to be discontinued due to lack of selectivity to the target,fast metabolism and clearance, or unspecific interactions, based on theresults of costly in vivo experiments. Therefore, there is a need forimproved prediction of in vivo behaviour of such diagnostic compounds aswell as therapeutic compounds, e.g. with better cell culture systemsspecifically adapted to PET/SPECT.

Keshari et al. relates to the metabolic response of prostate cancer tonicotinamide phosphoribosyltransferase inhibition in a hyperpolarisedmagnetic resonance/PET-compatible bioreactor. Disclosed is a perfusionbioreactor compatible with hyperpolarised magnetic resonance and PET todevelop translatable biomarkers of response to nicotinamidephosphoribosyltransferase inhibition in reduced volume cell cultures. Asingle cell culture of prostate cancer cells was embedded into analginate hydrogel and cultured in the bioreactor (p. 1603, left col, §2). A small animal micro-PET/computer tomography (CT) scanner (Inveon,Siemens Medical Solutions) was used for PET imaging. Medium containing 5μCi/ml of 2-deoxy-2-[¹⁸F] fluoroglucose ([¹⁸F] FDG) was perfused throughthe bioreactor system for 40 minutes and washed out for 40 minutes. Forthe purposes of higher throughput, four bioreactors were runconcurrently in the PET detector, one containing empty alginateencapsulates as a control (p. 1604, left col, § 2). However, thisapproach is complicated, high in instrumentation load and thereforecost-intensive.

Whitehead et al., 2012, relates to an artificial tissue bioreactor forbiological and imaging applications. The disclosed bioreactor isintegrated with a micro-PET scanner. The cell chamber of the disclosedbioreactor is a glass vessel containing borosilicate glass beads with adiameter between 1.4 and 1.7 mm (p. 2420, right col, § 2). A singleculture of the HepG2 liver cell line was drawn into a syringe andinjected into the cell chamber of the bioreactor (p. 2421, left col, §5). The cells were allowed to settle into the bead matrix for about 16hours and allowed to expand for five days before being subjected toglucose tolerance tests and then to micro-PET scanning with [11C]palmitate as a radiotracer (p. 2421, right col, § 1-5). Whitehead etal., 2013, discloses the same glass bead bioreactor for research,discovery, and validation of imaging biomarkers andradiopharmaceuticals. Throughput of this glass bead bioreactor isrelatively low, however.

It is thus an object of the present invention to provide improvedmethods and devices for cell culture PET, especially to attain a highermeasurement throughput.

The present invention provides a method for concurrent micro-PET ormicro-SPECT of at least two cell cultures in a biocompatible column. Thecolumn comprises an inlet, an axially oriented perfusion chamber and anoutlet, both the inlet and the outlet being fluidly connected to theperfusion chamber. The perfusion chamber comprises a porous solid phase,in aqueous liquid phase, a first cell culture and a second cell culture.At least a portion of the first cell culture (e.g. at least 1%,preferably at least 5%, more preferably at least 10%, even morepreferably at least 20%, yet even more preferably at least 30%,especially at least 40% or even at least 50% of the surface of the cellculture, e.g. the MTS) and at least a portion of the second cell culture(e.g. at least 1%, preferably at least 5%, more preferably at least 10%,even more preferably at least 20%, yet even more preferably at least30%, especially at least 40% or even at least 50% of the surface of thecell culture, e.g. the MTS) are in contact with the solid phase; anotherportion of the first and second cell culture, respectively, is typicallyin contact with the liquid phase. The first cell culture is separatedfrom the second cell culture by at least a portion of the solid phase.The method comprises the following steps:

(A) inserting the column into a micro-PET or micro-SPECT scanner;

(B) conducting an aqueous labelling liquid comprising a radioactivetracer via the inlet through the perfusion chamber towards the outlet,such that at least a portion of the cells of the first cell culture andat least a portion of the cells of the second cell culture are contactedwith the radioactive tracer (preferably, a fraction, e.g. at least 0.5%or at least 5% or at least 10% by weight, of the radioactive tracerremains bound to the first and/or the second cell culture; such bindingmay be extracellularly and/or intracellularly);

(C) conducting an aqueous washing liquid via the inlet through theperfusion chamber towards the outlet, such that at least a portion ofthe radioactive tracer is removed from the perfusion chamber through theoutlet; and

(D) scanning the column with the micro-PET or micro-SPECT scanner.

Different orders of the steps, such as B-C-A-D or B-A-C-D, are alsoencompassed by this method. The order A-B-C-D is the most preferred,though.

The present invention also provides a biocompatible column forconcurrent micro-PET or micro-SPECT of at least two cell cultures. Thecolumn comprises an inlet, an axially oriented perfusion chamber and anoutlet, both the inlet and the outlet being fluidly connected to theperfusion chamber. The perfusion chamber comprises a porous solid phasewhich comprises at least one (preferably at least two, more preferablyat least three, even more preferably at least four, yet even morepreferably at least five, especially at least six) sponge comprising (inparticular made of) at least one biopolymer. The perfusion chamberfurther comprises an aqueous liquid phase, a first cell culture and asecond cell culture. At least a portion of the first cell culture (e.g.at least 1%, preferably at least 5%, more preferably at least 10%, evenmore preferably at least 20%, yet even more preferably at least 30%,especially at least 40% or even at least 50% of the surface of the cellculture, e.g. the MTS) and at least a portion of the second cell culture(e.g. at least 1%, preferably at least 5%, more preferably at least 10%,even more preferably at least 20%, yet even more preferably at least30%, especially at least 40% or even at least 50% of the surface of thecell culture, e.g. the MTS) are in contact with the solid phase; anotherportion of the first and second cell culture, respectively, is typicallyin contact with the liquid phase. The first cell culture is separatedfrom the second cell culture by at least a portion of the solid phase.

In another aspect of the present invention, a system for concurrentmicro-PET or micro-SPECT of at least two cell cultures is provided. Thesystem comprises the column of the present invention, wherein the columnis fluidly connected to a pump via its inlet and/or its outlet.Preferably, the system further has a temperature control for the columnand/or a sample injector fluidly connected to the inlet of the column.

In yet another aspect of the present invention, a micro-PET ormicro-SPECT scanner with the column of the present invention inserted isprovided.

In even yet another aspect of the present invention, a kit forconcurrent micro-PET or micro-SPECT of at least two cell cultures isprovided. The kit comprises at least one biocompatible column forconcurrent micro-PET or micro-SPECT of at least two cell cultures, thecolumn comprising an inlet, an axially oriented perfusion chamber and anoutlet, both the inlet and the outlet being fluidly connected to theperfusion chamber. The kit further comprises at least two (preferably atleast three, even more preferably at least five, yet even morepreferably at least ten, especially at least 20) sponges comprising (inparticular made of) at least one biopolymer, which biopolymer ispreferably selected from silk, silk fibroin, collagen, gelatin, agarose,alginate, polylactic acid, agar, methylcellulose and mixtures thereof.These sponges are pre-cut to fit into the perfusion chamber.

The present invention enables PET (and also SPECT) of cell cultures(even three-dimensional cell cultures such as spheroids and organoids)with a higher throughput. The present invention is highly suitable foraccelerated radioactive tracer (radiotracer) development. It isparticularly useful for measuring accumulation, tissue penetration,target specificity as well as for metabolism studies of radiotracerswith cells or multicellular tumour spheroids (MTS) in a biomatrix.Furthermore, the present invention allows conditioning of flow rates tostimulate blood flow within a complex tissue sample. The presentinvention also serves to reduce the number of animals needed inpreclinical drug development, thereby making such development moreefficient and reducing ethical concerns.

Entirely unrelated to PET or SPECT imaging, Mizuno et al. describe ahydrostatic pressure system for the application of hydrostatic fluidpressure to chondrocytes in 3D collagen sponges. The system comprises acolumn through which hydrostatic fluid pressure can be applied.Chondrocytes are cultured in collagen sponges, which are suspended insaid column. The disclosed system would not be suitable for PET or SPECTimaging, i.a. because imaging artifacts would be expected resulting fromimpaired washout of the solution accumulating around the attachmentpositions of the sponges.

Also completely unrelated to PET or SPECT imaging, US 2017/198246 A1discloses a small perfusion bioreactor comprising a container forholding cell culture medium connected to a capture column containing aproduct binding medium. The capture column allows capture of theexpressed product as the culture medium flows out of the container andthrough the column. The cell culture merely passes through the column asthe culture medium is drained out and is thus not retained in thecolumn.

Micro-PET and micro-SPECT devices are miniaturised PET and SPECTdevices, respectively, developed for imaging research applications onrodents and other small-animal models (an overview over thesetechnologies is given e.g. in Chatziioannou). Typically, the spatialresolution of micro-PET and micro-SPECT is higher than that of genericPET and SPECT devices (for imaging of human patients). Micro-PET andmicro-SPECT imaging functionality can also be combined in a singledevice, optionally with additional imaging functionalities such as CT(i.e. micro-PET/SPECT/CT), see e.g. Koba et al. At least micro-PET canalso be combined with magnetic resonance imaging (MRI) in a singledevice (i.e. micro-PET/MRI).

Due to their high resolution, these devices can also be used to imagecell cultures (see e.g. Keshari et al., Whitehead et al., 2012 andWhitehead et al., 2013, already described above).

Preferably, in the context of the present invention, a “micro-PETscanner” is a PET scanner with a transaxial field of view (FOV) diameterbelow 50 cm, preferably below 40 cm, more preferably below 30 cm, evenmore preferably below 25 cm, yet even more preferably below 20 cm,especially below 15 cm or even below 10 cm (but usually more than 1 cmor 2 cm) and/or reconstructed resolution at the centre of the FOV below4 mm, preferably below 3 mm, more preferably below 2 mm, especiallybelow 1.5 mm (typically, this resolution is around 1 mm). The term“micro-PET” alone thus relates to PET measurement in a micro-PETscanner. In the context of the present invention, the micro-PET scannermay also have additional imaging functionalities such as MRI, SPECTand/or CT, i.e. it may be e.g. a micro-PET/CT or micro-PET/SPECT/CT ormicro-PET/MRI scanner.

Preferably, in the context of the present invention, a “micro-SPECTscanner” is a SPECT scanner with a spatial resolution below 4 mm,preferably below 3 mm, more preferably below 2 mm, especially below 1.5mm or even below 1.0 mm (typically, this resolution is around 0.75 mm).The term “micro-SPECT” alone thus relates to SPECT measurement in amicro-SPECT scanner. In the context of the present invention, themicro-SPECT scanner may also have additional imaging functionalitiessuch as PET and/or CT, i.e. it may be e.g. a micro-SPECT/CT ormicro-PET/SPECT/CT scanner.

In the context of the present invention, the (first and/or second) cellculture may for instance be a primary cell culture, e.g. derived from abiopsy from a mammalian, preferably human, patient such as a cancerpatient. The (first and/or second) cell culture may also be e.g. a cellculture of a cell line, such as a mammalian or human cell line. The(first and/or second) cell culture may for instance also be a co-cultureof different cell types. The first and second cell culture may be of thesame cell type (e.g. to have biological replicates in the same perfusionchamber) or of different cell types (e.g. to study the effect of theradioactive tracer on different cell types within the same perfusionchamber).

Preferably, the first cell culture and/or the second cell culture is athree-dimensional cell culture, especially a spheroid or organoid. Inparticular, the first cell culture and/or the second cell culture is anMTS (see e.g. Hirschhaeuser et al.). The present invention isparticularly suitable for these types of cell cultures.

In a preferred embodiment of the present invention, the column comprisesat least three, preferably at least four, more preferably at least fiveof said cell cultures. This further increases measurement throughput ofthe present invention. For instance, the column may comprise fivesponges, each in contact with another cell culture (e.g. comprising therespective cell culture in its recess) and another sponge not in contactwith a cell culture.

Within the context of the present invention, the radioactive tracer is apositron-emitting compound (such as a compound containing at least one¹⁸F, ¹¹C, ¹³N, ¹⁵O, ⁸²Rb or ⁶⁸Ga) or a gamma-emitting compound (such asa compound containing at least one ^(99m)Tc, ¹⁷⁷Lu, ¹²³I, ¹³¹I or¹¹¹In). Commonly used radioactive tracers for PET are for instance2-deoxy-2-[¹⁸F] fluoroglucose, [¹⁸F] fluoroalkyl-choline, [¹⁸F]fluorouracil, [⁶⁸Ga] edotreotide and [¹¹C] acetate. Commonly usedradioactive tracers for SPECT are for instance [^(99m)Tc] sestamibi or[¹²³I]-meta-iodobenzylguanidine. However, the present invention is notlimited to commonly used radioactive tracers.

Preferably, the aqueous labelling liquid is a buffered solution of theradioactive tracer, in particular with a physiological pH, e.g. theradioactive tracer in phosphate-buffered saline (PBS) or in growthmedium. Preferably, the aqueous washing liquid is a buffered solution,in particular with a physiological pH, e.g. PBS or growth medium. Mosttypically, the washing solution does not contain any radioactive tracer.

In a particularly preferred embodiment of the present invention, theporous solid phase present in the perfusion chamber of the columncomprises at least one (preferably at least two, more preferably atleast three, even more preferably at least four, yet even morepreferably at least five, especially at least six) sponge comprising (inparticular made of) at least one biopolymer. This biopolymer ispreferably selected from silk, silk fibroin, collagen, gelatin, agarose,alginate, polylactic acid, agar, methylcellulose and mixtures thereof.Such sponges are e.g. disclosed in Rnjak-Kovacina et al., Widdowson etal., Rohanizadeh et al., Shapiro et al., Carfi-Pavia et al. and Poonamet al. In the course of the present invention, silk fibroin spongesturned out to be especially suitable for supporting cell cultures, inparticular three-dimensional cell cultures such as MTS, within theinventive column during PET or SPECT analysis, while showing only lowinteractions with radioactive tracers. Silk fibroin sponges are forinstance disclosed in Teuschl et al. It is especially preferred that thesponge is pre-cut to fit into the perfusion chamber. For instance, ifthe perfusion chamber has a circular profile, the sponges can be pre-cutby punching device with a circular blade.

Within the context of the present invention, the sponge(s) preferablyhave a maximum diameter between 0.5 mm and 50 mm, preferably between 1mm and 40 mm, more preferably between 1.5 mm and 25 mm, especiallybetween 2 mm and 10 mm.

In a further preferred embodiment of the present invention, the poroussolid phase (e.g. at least one sponge) has an average pore diameterbetween 50 μm and 1000 μm, preferably between 75 μm and 750 μm, morepreferably between 100 μm and 600 μm, even more preferably between 125μm and 500 μm, yet even more preferably between 150 μm and 450 μm,especially between 200 μm and 400 μm. The mentioned average porediameter range turned out to be suitable for supporting the cells whilestill allowing for an appropriate flow rate through the perfusionchamber.

As the spatial resolution of micro-PET and micro-SPECT is limited, it isadvantageous when the cell cultures in the perfusion chamber have asufficient distance from each other such that the signal of theradioactive tracer bound to the first cell culture is not disturbedsignificantly by the signal of the radioactive tracer bound to thesecond cell culture. A minimal distance between 600 μm and 5000 μm wasfound to be particularly effective. Therefore, in a preferredembodiment, the minimal distance between the first cell culture and thesecond cell culture is at least 600 μm, preferably at least 700 μm, morepreferably at least 800 μm, even more preferably at least 900 μm, yeteven more preferably at least 1000 μm, especially at least 2000 μm oreven at least 5000 μm.

According to an especially preferred embodiment of the presentinvention, the porous solid phase comprises at least a first and asecond of said sponges. In this embodiment, at least a portion of thefirst culture (e.g. at least 1%, preferably at least 5%, more preferablyat least 10%, even more preferably at least 20%, yet even morepreferably at least 30%, especially at least 40% or even at least 50% ofthe surface of the cell culture, e.g. the MTS) is in contact with thefirst sponge and at least a portion of the second culture (e.g. at least1%, preferably at least 5%, more preferably at least 10%, even morepreferably at least 20%, yet even more preferably at least 30%,especially at least 40% or even at least 50% of the surface of the cellculture, e.g. the MTS) is in contact with the second sponge. Preferably,at least a portion of the first culture (e.g. at least 1%, preferably atleast 5%, more preferably at least 10%, even more preferably at least20%, yet even more preferably at least 30%, especially at least 40% oreven at least 50% of the surface of the cell culture, e.g. an MTS) isattached to the first sponge and at least a portion of the secondculture (e.g. at least 1%, preferably at least 5%, more preferably atleast 10%, even more preferably at least 20%, yet even more preferablyat least 30%, especially at least 40% or even at least 50% of thesurface of the cell culture, e.g. an MTS) is attached to the secondsponge. Herein, the expression of the cell culture being “attached” tothe sponge shall mean that at least a portion of the cells (e.g. atleast 1%, preferably at least 5%, more preferably at least 10%, evenmore preferably at least 20%, yet even more preferably at least 30%,especially at least 40% or even at least 50% of the surface of the cellculture, e.g. an MTS) of the cell culture have formed an attachment tothe sponge by their cell adhesion molecules (CAMs) such as selectins,integrins or cadherins. Such cell adhesion may for instance be promotedby incubating the cell culture when it is in contact with the sponge ingrowth medium at 37° C. for 2 to 3 hours.

In another preferment, the first sponge has a recess comprising at leasta portion of the first culture (e.g. at least 5%, preferably at least10%, more preferably at least 25%, even more preferably at least 50%,yet even more preferably at least 75%, especially at least 90% or evenat least 95% of the volume of the cell culture, e.g. an MTS) and thesecond sponge has a recess comprising at least a portion of the secondcell culture (e.g. at least 5%, preferably at least 10%, more preferablyat least 25%, even more preferably at least 50%, yet even morepreferably at least 75%, especially at least 90% or even at least 95% ofthe volume of the cell culture, e.g. an MTS). This recess serves toenhance the favourable interactions between the cell culture and thebiopolymer of the sponge by increasing the interaction surface betweenthem as well as stabilising the cell culture in its position. Typically,the maximum diameter of the recess is larger than the average porediameter of the porous solid phase (and/or of the sponge which has therecess), preferably at least 2× as large, more preferably at least 3× aslarge, yet even more preferably at least 4× as large, especially atleast 5× as large. For instance, the recess may have a maximum diameterof more than 1 mm, or even more than 2 mm, especially of more than 3 mm.

In order to identify individual cell cultures in the PET or SPECT scans,the column comprises, in a preferred embodiment, an additionalradioactive label or a radiopaque label to indicate the position of atleast one of the cell cultures in the column. If the label isradioactive, e.g. a positron-emitting compound (such as a compoundcontaining at least one ¹⁸ _(F,) ¹¹C, ¹³ _(N), ¹⁵O, ⁸²Rb or ⁶⁸Ga) or agamma-emitting compound (such as a compound containing at least one^(99m)Tc, ¹²³I, ¹³¹I or ¹¹¹In), the label is preferably present insolution, e.g. in aqueous solution. Advantageously, the column comprisesan additional chamber containing the radioactive label, preferably inthe form of a solution. If the label is radiopaque (in particular withrespect to x-rays, e.g. for use in micro-PET/CT or micro-SPECT/CT, suchas for superimposition of the PET image and the CT image), e.g. a metaloxide such as zirconium dioxide, barium sulphate, ferrite, magnetite,potassium salts, or heavy metal particulates, then the label ispreferably present as a solid, e.g. in the form of small plates ordiscs. Advantageously, the column comprises an additional chambercontaining the radioactive label, preferably in the form of small platesor discs.

By way of example, the column may comprise several empty (small)chambers along the axis of the perfusion chamber. The perfusion chamberis filled with the sponges, each loaded with a cell culture. For eachcell culture, only the chamber closest to the cell culture is filledwith a solution with the radioactive label or with a radiopaque plate ordisc. In the PET or SPECT scan (or in the superimposed CT scan), thesechambers will be detected and serve as an additional control, indicatingthe position of each cell culture. Of course, the characteristics of thechamber may depend on whether it is to be filled with a solution or withplates or discs.

In another preferred embodiment, the perfusion chamber further comprisesat least one solid marker indicating the position of at least one of thecell cultures in the column. This solid marker has a higher density thanthe porous solid phase (e.g. the sponges), preferably at least 1.25× ashigh, more preferably at least 1.5× as high, especially at least 2× ashigh. This allows for easier identification of the cell cultures inimaging methods. Of course, the solid marker does not completely inhibitflow in the perfusion chamber. Therefore, the solid marker is preferablyporous. For instance, the solid marker may be a filter (see e.g. FIG.7). The solid marker may be located between two of the sponges (see alsoFIG. 7). When calculating their respective density, the content of thepores of the porous solid phase and the content of the pores of theporous solid marker (if any) shall be taken into account, respectively,i.e. considering the total mass of the material vs. its volume when itspores are filled with water.

According to a further preferred embodiment, at least a portion of thecolumn is transparent, preferably such that at least a portion of thecontents of the perfusion chamber is visible from the outside. This isuseful for checking the status of the perfusion chamber, e.g. beforeinserting the column into the PET or SPECT scanner.

According to a further preferred embodiment, the first cell culture hasa higher binding affinity to the radioactive tracer than the second cellculture.

In the context of the inventive method, it is preferred that conductingof step (B) and/or step (C) comprises turbulent liquid flow (as opposedto laminar flow) through the perfusion chamber, preferably with a flowrate of 0.01 ml/min to 10 ml/min, preferably 0.025 ml/min to 7.5 ml/min,more preferably 0.05 ml/min to 5 ml/min, especially 0.1 ml/min to 2ml/min. Turbulent flow turned out to lead to a situation for the cellcultures which is closer to the physiological situation (i.e. liquidflow through tissue is typically turbulent). This is a crucial advantageof the present invention over microfluidic systems which almost alwayshave laminar liquid flow.

Turning to the kit aspect of the present invention specifically, the kitmay further comprise usage instructions, e.g. instructions to use thecolumn of the kit in a PET or SPECT scanner, in particular instructionsto use the kit according to the inventive method. Preferably, theinventive kit further comprises at least two filters which are pre-cutto fit into the perfusion chamber of the column of the kit. According tofurther preference, the kit further comprises at least one sterilefilter, i.e. a filter with an average pore size below 1 μm, preferablybelow 0.5 μm, especially below 0.25 μm. This sterile filter e.g. may beattached to the inlet and/or the outlet of the column. The inventive kitmay also comprise tubing.

The inventive kit may also comprise at least one of the radiopaque labeldiscussed above, for instance in the form of small plates or discs.Especially in this case, the column may have additional chambers foroptional filling with the radiopaque labels.

Within the context of the present invention, the column preferably has adiameter between 0.5 mm and 20 mm, preferably between 1 mm and 10 mm,especially between 2 mm and 8 mm.

Furthermore, within the context of the present invention, it is highlypreferred that the porous solid phase does not comprise a hydrogel.Alternatively, or in addition thereto, the porous solid phase preferablyhas irregular pores.

Herein, the expression “biocompatible column” shall preferably mean thatthe surfaces of the column (e.g. in the perfusion chamber) which comeinto contact with the cell cultures during use do not (significantly)inhibit cell growth, i.e. they are not (significantly) cytotoxic.

The present invention further relates to the following embodiments:

Embodiment 1. A method for concurrent micro-positron emission tomography(micro-PET) or micro-single photon emission computed tomography(micro-SPECT) of at least two cell cultures in a biocompatible column,the column comprising an inlet, an axially oriented perfusion chamberand an outlet, wherein the inlet is fluidly connected to the perfusionchamber and the outlet is fluidly connected to the perfusion chamber,wherein the perfusion chamber comprises a porous solid phase, an aqueousliquid phase, a first cell culture and a second cell culture, wherein atleast a portion of the first cell culture and at least a portion of thesecond cell culture are in contact with the solid phase and wherein thefirst cell culture is separated from the second cell culture by at leasta portion of the solid phase;the method comprising the steps of

(A) inserting the column into a micro-PET or micro-SPECT scanner;

(B) conducting an aqueous labelling liquid comprising a radioactivetracer via the inlet through the perfusion chamber (3) towards theoutlet, such that at least a portion of the cells of the first cellculture and at least a portion of the cells of the second cell cultureare contacted with the radioactive tracer;

(C) conducting an aqueous washing liquid via the inlet through theperfusion chamber towards the outlet, such that at least a portion ofthe radioactive tracer is removed from the perfusion chamber through theoutlet; and

(D) scanning the column with the micro-PET or micro-SPECT scanner.

Embodiment 2. The method of embodiment 1, wherein the first cell cultureand/or the second cell culture is a spheroid or an organoid.Embodiment 3. The method of embodiment 2, wherein the first cell cultureand/or the second cell culture is a multicellular tumour spheroid (MTS).Embodiment 4. The method of any one of embodiments 1 to 3, wherein theconducting of step (B) and/or step (C) comprises turbulent liquid flowthrough the perfusion chamber, preferably with a flow rate of 0.01ml/min to 10 ml/min, preferably 0.025 ml/min to 7.5 ml/min, morepreferably 0.05 ml/min to 5 ml/min, especially 0.1 ml/min to 2 ml/min.Embodiment 5. The method of any one of embodiments 1 to 4, wherein theporous solid phase comprises at least one sponge comprising at least onebiopolymer, preferably wherein the biopolymer is selected from silk,silk fibroin, collagen, gelatin, agarose, alginate, polylactic acid,agar, methyl-cellulose and mixtures thereof and/or wherein the ispre-cut to fit into the perfusion chamber.Embodiment 6. The method of any one embodiments 1 to 5, wherein theporous solid phase has an average pore diameter between 50 pm and 1000μm, preferably between 75 μm and 750 μm, more preferably between 100 μmand 600 μm, even more preferably between 125 μm and 500 μm, yet evenmore preferably between 150 μm and 450 μm, especially between 200 μm and400 μm.Embodiment 7. The method of any one of embodiments 1 to 6, wherein theminimal distance between the first cell culture and the second cellculture is at least 600 μm, preferably at least 700 μm, more preferablyat least 800 μm, even more preferably at least 900 μm, yet even morepreferably at least 1000 μm, especially at least 2000 μm or even atleast 5000 μm.Embodiment 8. The method of any one of embodiments 5 to 7, wherein theporous solid phase comprises at least a first and a second of saidsponges, wherein at least a portion of the first culture is in contactwith the first sponge and at least a portion of the second culture is incontact with the second sponge.Embodiment 9. The method of embodiment 8, wherein at least a portion ofthe first culture is attached to the first sponge and at least a portionof the second culture is attached to the second sponge.Embodiment 10. The method of embodiment 8 or 9, wherein the first spongehas a recess comprising at least a portion of the first cell culture andthe second sponge has a recess comprising at least a portion of thesecond cell culture.Embodiment 11. The method of any one of embodiments 1 to 10, wherein thecolumn comprises an additional radioactive or radiopaque labelindicating the position of at least one of the cell cultures in thecolumn.Embodiment 12. The method of embodiment 11, wherein the column comprisesan additional chamber containing the radioactive or radiopaque label.Embodiment 13. The method of any one of embodiments 1 to 12, wherein theperfusion chamber further comprises at least one solid marker indicatingthe position of at least one of the cell cultures in the column, whereinthe solid marker has a higher density than the porous solid phase,preferably at least 1.25× as high, more preferably at least 1.5× ashigh, especially at least 2× as high.Embodiment 14. The method of any one of embodiments 1 to 13, wherein atleast a portion of the column is transparent.Embodiment 15. The method of any one of embodiments 1 to 14, wherein thefirst cell culture has a higher binding affinity to the radioactivetracer than the second cell culture.Embodiment 16. A biocompatible column for concurrent micro-PET ormicro-SPECT of at least two cell cultures,the column comprising an inlet, an axially oriented perfusion chamberand an outlet, wherein the inlet is fluidly connected to the perfusionchamber and the outlet is fluidly connected to the perfusion chamber,wherein the perfusion chamber comprises a porous solid phase comprisingat least one sponge comprising at least one biopolymer, an aqueousliquid phase, a first cell culture and a second cell culture, wherein atleast a portion of the first cell culture and at least a portion of thesecond cell culture are in contact with the solid phase and wherein thefirst cell culture is separated from the second cell culture by at leasta portion of the solid phase.Embodiment 17. The column of embodiment 16, wherein the first cellculture and/or the second cell culture is a spheroid or an organoid.Embodiment 18. The column of embodiment 17, wherein the first cellculture and/or the second cell culture is an MTS.Embodiment 19. The column of any one of embodiments 16 to 18, whereinthe biopolymer is selected from silk, silk fibroin, collagen, gelatin,agarose, alginate, polylactic acid, agar, methyl-cellulose and mixturesthereof.Embodiment 20. The column of embodiment 19, wherein the biopolymer issilk fibroin.Embodiment 21. The column of any one of embodiments 16 to 20, whereinthe sponge is pre-cut to fit into the perfusion chamber.Embodiment 22. The column of any one of embodiments 16 to 21, whereinthe porous solid phase has an average pore diameter between 50 μm and1000 μm, preferably between 75 μm and 750 μm, more preferably between100 μm and 600 μm, even more preferably between 125 μm and 500 μm, yeteven more preferably between 150 μm and 450 μm, especially between 200μm and 400 μm.Embodiment 23. The column of any one of embodiments 16 to 22, whereinthe minimal distance between the first cell culture and the second cellculture is at least 600 μm, preferably at least 700 μm, more preferablyat least 800 μm, even more preferably at least 900 μm, yet even morepreferably at least 1000 μm, especially at least 2000 μm or even atleast 5000 μm.Embodiment 24. The column of any one of embodiments 16 to 23, whereinthe porous solid phase comprises at least a first and a second of saidsponges, wherein at least a portion of the first culture is in contactwith the first sponge and at least a portion of the second culture incontact with the second sponge.Embodiment 25. The column of embodiment 24, wherein at least a portionof the first culture is attached to the first sponge and at least aportion of the second culture is attached to the second sponge.Embodiment 26. The column of embodiment 24 or 25, wherein the firstsponge has a recess comprising at least a portion of the first cellculture and the second sponge has a recess comprising at least a portionof the second cell culture.Embodiment 27. The column of any one of embodiments 16 to 26, whereinthe column comprises an additional radioactive or radiopaque labelindicating the position of at least one of the cell cultures in thecolumn.

Embodiment 28. The column of embodiment 27, wherein the column comprisesan additional chamber containing the radioactive or radiopaque label.

Embodiment 29. The column of any one of embodiments 16 to 28, whereinthe perfusion chamber further comprises at least one solid markerindicating the position of at least one of the cell cultures in thecolumn, wherein the solid marker has a higher density than the poroussolid phase, preferably at least 1.25× as high, more preferably at least1.5× as high, especially at least 2× as high.Embodiment 30. The column of any one of embodiments 16 to 29, wherein atleast a portion of the column is transparent.Embodiment 31. The column of any one of embodiments 16 to 30, whereinthe first cell culture has a higher binding affinity to the radioactivetracer than the second cell culture.Embodiment 32. A system for concurrent micro-PET or micro-SPECT of atleast two cell cultures, comprising the column of any one of embodiments16 to 30 fluidly connected to a pump via the inlet and/or the outlet,preferably wherein the system further has a temperature control for thecolumn and/or a sample injector fluidly connected to the inlet of thecolumn.Embodiment 33. A micro-PET or micro-SPECT scanner with the column of anyone of embodiments 16 to 30 inserted.Embodiment 34. A kit for concurrent micro-PET or micro-SPECT of at leasttwo cell cultures, comprising:

at least one biocompatible column for concurrent micro-PET ormicro-SPECT of at least two cell cultures,

the column comprising an inlet, an axially oriented perfusion chamberand an outlet, wherein the inlet is fluidly connected to the perfusionchamber and the outlet is fluidly connected to the perfusion chamber;and

at least two sponges comprising at least one biopolymer, preferablyselected from silk, silk fibroin, collagen, gelatin, agarose, alginate,polylactic acid, agar, methyl-cellulose and mixtures thereof, whereinthe sponges are pre-cut to fit into the perfusion chamber.

Embodiment 35. The kit of embodiment 34, further comprising at least twofilters pre-cut to fit into the perfusion chamber, preferably whereinthe filters have a higher density than the at least two sponges, morepreferably at least 1.25× as high, even more preferably at least 1.5× ashigh, especially at least 2× as high.Embodiment 36. The kit of embodiment 34 or 35, further comprising atleast one sterile filter.

The present invention is further illustrated by the following figuresand examples, without being restricted thereto.

FIG. 1: Embodiment of the biocompatible column of the present invention.

FIG. 2: Scheme and photograph of prototypes of the inventivebiocompatible column. The column has a plastic housing as well as frits,the plastic housing forming a perfusion chamber with a solid porousphase consisting of several silk fibroin sponges as well as a liquidphase consisting of cell growth medium. The two dots on the lower columnin the photograph indicate the presence of two cell cultures in therecesses of the sponges (MTS with about 1 mm diameter each).

FIG. 3: Conceptual design of a fully automated system for concurrentmicro-PET of at least two cell cultures, including a pump system fortransportation of the liquid phase, injector valve for injection of theradioactive tracer, the biocompatible column with the cell cultures,micro-PET (μPET) as detection system, and a waste bottle. Severalcomponents are connected to a computer for process control, dataacquisition and reconstruction.

FIG. 4: Example for preparation of the biocompatible column. 1) Cellculture suspension is applied to the sponges; 2) cells are allowed tosettle for at least 6 h; 3) sponge is inserted into the column andwetted with culture media; 4) the radioactive tracer is applied in astop-flow mechanism; 5) removing residual radioactive tracer; 6)detection of radioactive tracer accumulation.

FIG. 5: PET scan of the inventive column loaded with five MTS. Anaqueous solution [¹⁸F] FDG was manually transferred through the poroussolid phase with the five MTS (˜700 μm in diameter each). After anincubation time of 60 min the unbound [¹⁸F] FDG was washed out and thecolumn was afterwards inserted into a micro-PET scanner and scanned. MTS2 and 3, which were in close proximity to each other, could not bedistinguished, whereas MTS 1, 4, and 5 could be well separated withexceptional signal-to-noise ratio.

FIG. 6: PET scan of the inventive column loaded with two cell cultures(cells of HT29 human colorectal adenocarcinoma cell line seeded on twodifferent silk sponges). An aqueous solution with [¹⁸F] FDG was manuallytransferred through the porous solid phase with five MTS (˜700 μm indiameter each). After an incubation time of 60 min the unbound [¹⁸F] FDGwas washed out and the column was subsequently inserted into a micro-PETscanner and scanned. The two HT29 cell cultures can be clearlydistinguished from each other in the scan.

FIG. 7: Photograph of another prototype of the inventive column. Thecolumn has a plastic housing as well as frits, the plastic housingforming a perfusion chamber with a solid porous phase consisting of foursilk fibroin sponges (indicated by the labels written onto the column)and filters (white material in the perfusion chamber) as well as aliquid phase consisting of cell growth medium. Each silk fibroin spongecontains in its recess an MTS with about 0.5 mm diameter. Each spongehas two filters adjacent to it. The filters have a higher density thanthe sponges, allowing easier identification of each MTS in themeasurements. In other words, each filter is a solid marker indicatingthe position of at least one of the cell cultures (MTS) in the column.

EXAMPLE 1—BIOCOMPATIBLE COLUMN

FIG. 1 shows the biocompatible column 1 for concurrent micro-PET ormicro-SPECT of the first cell culture 6 a and the second cell culture 6b, which are both MTS. The column comprises the inlet 2, the axiallyoriented perfusion chamber 3 and the outlet 4. Both the inlet 2 and theoutlet 4 are fluidly connected to the perfusion chamber 3. The perfusionchamber 3 comprises porous solid phase formed by four sponges, 7 c, 7 d,7 a, 7 b, made of a biopolymer and which were pre-cut to fit intoperfusion chamber 3. The liquid phase 5 consisting of growth mediumextends from the inlet 2 through sponges 7 c, 7 d, 7 a, 7 b to theoutlet 4. Sponges 7 a and 7 b have recesses 8 a and 8 b, respectively.The first cell culture 6 a is located within recess 8 a being in contactwith sponge 7 a, and the second cell culture 6 b is located withinrecess 8 b being in contact with sponge 7 b. Sponges 7 c and 7 d neitherhave a recess nor a cell culture. The first cell culture 6 a and thesecond cell culture 6 b our separated from each other by sponge 7 a. Thecolumn 1 further has one filter 50 adjacent to the inlet 2 and anotherfilter 50 adjacent to sterile filter 51, which is adjacent to the outlet4.

EXAMPLE 2—SYSTEM FOR CONCURRENT MICRO-PET OR MICRO-SPECT OF AT LEAST TWOCELL CULTURES

The main objective of the system is to facilitate in vitro drug andespecially PET or SPECT tracer development by providing a methodapplicable for assessment of drug distribution, accumulation, metabolismand excretion in a 3D bioscaffold with interstitial stop-flowconditions. The system consists of a mobile phase, which deliversnutrients, O₂ and CO₂ as well as the drug/tracer or modifiers over aconstant flow through a biological stationary phase consisting of cells,MTS or organoids embedded in biopolymer sponges. A prototype of thecolumn with the biological stationary phase is shown in FIG. 2.

The system furthermore comprises a controllable pump system, anapparatus to fixate the column and control the temperature, as well as amicro-PET scanner as detection unit (see FIG. 3).

An example for preparation of the biocompatible column is shown in FIG.4.

EXAMPLE 3—EXPERIMENTAL RESULTS

Four different columns were introduced into the micro-PET scanner andscanned:

a) a column prepared with silk sponges without cell cultures (backgroundmeasurement),

b) a column prepared with spheroids pre-incubated with [¹⁸F] FDG(signal-to-noise ratio measurement),

c) a column prepared with spheroids which were placed in differentdistances and the [¹⁸F] FDG was introduced in a stop-flow mechanism (seeFIG. 5), and

d) a column prepared with cells grown on silk sponges with a cell-freesponge in between (see FIG. 6).

The scan of column a) showed low binding of [¹⁸F] FDG to the silk spongeand low unspecific binding of polar compounds to silk in general.

The scan of column b) clearly indicated that the spheroids could besuccessfully detected within the column.

The scan of column c) confirmed the low specific binding of [¹⁸F] FDG tothe silk scaffold, and portrayed a surprisingly high resolution betweenthe spheroids, as all spheroids could be imaged separately, except forthe spheroids 2 and 3. This result is particularly important, as thespheroid size of approximately 700 μm lies below the resolution of themicro-PET device used.

The scan of column d) clearly highlights the regions with HT29 cells(see FIG. 6), further indicating the high potential of the presentinvention.

NON-PATENT REFERENCES

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1. A method for concurrent micro-positron emission tomography(micro-PET) or micro-single photon emission computed tomography(micro-SPECT) of at least two cell cultures in a biocompatible column,the column comprising an inlet, an axially oriented perfusion chamberand an outlet wherein the inlet is fluidly connected to the perfusionchamber and the outlet is fluidly connected to the perfusion chamber,wherein the perfusion chamber comprises a porous solid phase, an aqueousliquid phase, a first cell culture and a second cell culture wherein atleast a portion of the first cell culture and at least a portion of thesecond cell culture are in contact with the solid phase and wherein thefirst cell culture is separated from the second cell culture by at leasta portion of the solid phase; the method comprising the steps of: (A)inserting the column into a micro-PET or micro-SPECT scanner; (B)conducting an aqueous labelling liquid comprising a radioactive tracervia the inlet through the perfusion chamber towards the outlet, suchthat at least a portion of the cells of the first cell culture and atleast a portion of the cells of the second cell culture are contactedwith the radioactive tracer; (C) conducting an aqueous washing liquidvia the inlet through the perfusion chamber towards the outlet, suchthat at least a portion of the radioactive tracer is removed from theperfusion chamber through the outlet; and (D) scanning the column withthe micro-PET or micro-SPECT scanner.
 2. The method of claim 1, whereinthe first cell culture and/or the second cell culture is a spheroid oran organoid.
 3. The method of claim 2, wherein the first cell cultureand/or the second cell culture is a multicellular tumour spheroid (MTS).4. The method of claim 1, wherein the conducting of step (B) and/or step(C) comprises turbulent liquid flow through the perfusion chamber,preferably with a flow rate of 0.01 ml/min to 10 ml/min, preferably0.025 ml/min to 7.5 ml/min, more preferably 0.05 ml/min to 5 ml/min,especially 0.1 ml/min to 2 ml/min.
 5. The method of claim 1, wherein theporous solid phase comprises at least one sponge comprising at least onebiopolymer, preferably wherein the biopolymer is selected from silk,silk fibroin, collagen, gelatin, agarose, alginate, polylactic acid,agar, methyl-cellulose and mixtures thereof and/or wherein the sponge ispre-cut to fit into the perfusion chamber.
 6. The method of claim 1,wherein the porous solid phase has an average pore diameter between 50μm and 1000 μm, preferably between 75 μm and 750 μm, more preferablybetween 100 μm and 600 μm, even more preferably between 125 μm and 500μm, yet even more preferably between 150 μm and 450 μm, especiallybetween 200 μm and 400 μm.
 7. The method of claim 1, wherein the minimaldistance between the first cell culture and the second cell culture isat least 600 μm, preferably at least 700 μm, more preferably at least800 μm, even more preferably at least 900 μm, yet even more preferablyat least 1000 μm, especially at least 2000 μm or even at least 5000 μm.8. The method of claim 5, wherein the porous solid phase comprises atleast a first and a second of said sponges wherein at least a portion ofthe first culture is in contact with the first sponge and at least aportion of the second culture is in contact with the second sponge. 9.The method of claim 8, wherein the first sponge has a recess comprisingat least a portion of the first cell culture and the second sponge has arecess comprising at least a portion of the second cell culture.
 10. Abiocompatible column for concurrent micro-PET or micro-SPECT of at leasttwo cell cultures, the column comprising: an inlet, an axially orientedperfusion chamber and an outlet wherein the inlet is fluidly connectedto the perfusion chamber and the outlet is fluidly connected to theperfusion chamber, wherein the perfusion chamber comprises a poroussolid phase comprising at least one sponge comprising at least onebiopolymer, an aqueous liquid phase, a first cell culture and a secondcell culture, wherein at least a portion of the first cell culture andat least a portion of the second cell culture are in contact with thesolid phase and wherein the first cell culture is separated from thesecond cell culture by at least a portion of the solid phase.
 11. Thecolumn of claim 10, wherein the biopolymer is silk fibroin.
 12. A systemfor concurrent micro-PET or micro-SPECT of at least two cell cultures,comprising the column of claim 10 fluidly connected to a pump via theinlet and/or the outlet, preferably wherein the system further has atemperature control for the column and/or a sample injector fluidlyconnected to the inlet of the column.
 13. A micro-PET or micro-SPECTscanner with the column of claim 10 inserted.
 14. A kit for concurrentmicro-PET or micro-SPECT of at least two cell cultures, comprising: atleast one biocompatible column for concurrent micro-PET or micro-SPECTof at least two cell cultures, the column comprising an inlet, anaxially oriented perfusion chamber and an outlet, wherein the inlet isfluidly connected to the perfusion chamber and the outlet is fluidlyconnected to the perfusion chamber; and at least two sponges comprisingat least one biopolymer, preferably selected from silk, silk fibroin,collagen, gelatin, agarose, alginate, polylactic acid, agar,methyl-cellulose and mixtures thereof, wherein the sponges are pre-cutto fit into the perfusion chamber.
 15. The kit of claim 14, furthercomprising at least two filters pre-cut to fit into the perfusionchamber, preferably wherein the filters have a higher density than theat least two sponges, more preferably at least 1.25× as high, even morepreferably at least 1.5× as high, especially at least 2× as high.